Bioconductor version: Release (3.14)
The liftOver facilities developed in conjunction with the UCSC browser track infrastructure are available for transforming data in GRanges formats. This is illustrated here with an image of the EBI/NHGRI GWAS catalog that is, as of May 10 2017, distributed with coordinates defined by NCBI build hg38.
Author: Bioconductor Package Maintainer [aut, cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("liftOver")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("liftOver")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("liftOver")
HTML | R Script | Changing genomic coordinate systems with rtracklayer::liftOver |
biocViews | BasicWorkflow, Workflow |
Version | 1.18.0 |
License | Artistic-2.0 |
Depends | R (>= 3.3.0), gwascat, GenomicRanges, rtracklayer, Homo.sapiens, BiocGenerics |
Imports | |
LinkingTo | |
Suggests | knitr, rmarkdown, BiocStyle |
SystemRequirements | |
Enhances | |
URL | https://www.bioconductor.org/help/workflows/liftOver/ |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me |
Follow Installation instructions to use this package in your R session.
Source Package | liftOver_1.18.0.tar.gz |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/liftOver |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/liftOver |
Package Short Url | https://bioconductor.org/packages/liftOver/ |
Package Downloads Report | Download Stats |
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