highthroughputassays

DOI: 10.18129/B9.bioc.highthroughputassays    

Using Bioconductor with High Throughput Assays

Bioconductor version: Release (3.14)

The workflow illustrates use of the flow cytometry packages to load, transform and visualize the flow data and gate certain populations in the dataset. The workflow loads the `flowCore`, `flowStats` and `flowWorkspace` packages and its dependencies. It loads the ITN data with 15 samples, each of which includes, in addition to FSC and SSC, 5 fluorescence channels: CD3, CD4, CD8, CD69 and HLADR.

Author: Bioconductor Package Maintainer [aut, cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("highthroughputassays")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("highthroughputassays")

 

HTML

R Script

Using Bioconductor with High Throughput Assays

Details

biocViews	ImmunoOncologyWorkflow, ProteomicsWorkflow, Workflow
Version	1.18.0
License	Artistic-2.0
Depends	R (>= 3.3.0), flowCore, flowStats, flowWorkspace
Imports
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://www.bioconductor.org/help/workflows/highthroughputassays/
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	highthroughputassays_1.18.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/highthroughputassays
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/highthroughputassays
Package Short Url	https://bioconductor.org/packages/highthroughputassays/
Package Downloads Report	Download Stats