brgedata

DOI: 10.18129/B9.bioc.brgedata    

Exposures, Gene Expression and Methylation data for ilustration purpouses

Bioconductor version: Release (3.14)

This package contains several sets of omics data including Gene Expression (ExpressionSet), Methylation (GenomicRatioSet), Proteome and Exposome (ExposomeSet). This data is used in vignettes and exaples at MEAL, MultiDataSet and omicRexposome.

Author: Dolors Pelegri-Siso [aut, cre], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]

Maintainer: Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("brgedata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("brgedata")

 

HTML	R Script	brgedata -- data R package with three omic data-set and exposome data-set from the same Spanish pupulation
PDF		Reference Manual
Text		LICENSE

Details

biocViews	ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.16.0
License	MIT + file LICENSE
Depends	R (>= 3.5.0), Biobase
Imports	SummarizedExperiment
LinkingTo
Suggests	minfi, MultiAssayExperiment, knitr, rmarkdown, rexposome
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	MEAL, MultiDataSet, omicRexposome
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	brgedata_1.16.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/brgedata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/brgedata
Package Short Url	https://bioconductor.org/packages/brgedata/
Package Downloads Report	Download Stats