STexampleData

DOI: 10.18129/B9.bioc.STexampleData    

Collection of spatially resolved transcriptomics datasets in SpatialExperiment Bioconductor format

Bioconductor version: Release (3.14)

Collection of spatially resolved transcriptomics datasets in SpatialExperiment Bioconductor format, for use in examples, demonstrations, tutorials, and other purposes. The datasets have been sourced from various publicly available sources, and cover several technological platforms.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STexampleData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STexampleData")

 

HTML	R Script	STexampleData package overview
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData
Version	1.2.0
License	MIT + file LICENSE
Depends	ExperimentHub, SpatialExperiment
Imports	utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/lmweber/STexampleData
BugReports	https://github.com/lmweber/STexampleData/issues
Depends On Me
Imports Me
Suggests Me	ggspavis
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	STexampleData_1.2.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/STexampleData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/STexampleData
Package Short Url	https://bioconductor.org/packages/STexampleData/
Package Downloads Report	Download Stats