Bioconductor version: Release (3.14)
| RLHub provides a convenient interface to the processed data provided within RLSuite, a tool-chain for analyzing R-loop-mapping data sets. The primary purpose of RLHub is to serve the processed data sets required by the RLSeq R package and the RLBase web service. Additionally, RLHub provides a stand-alone R interface to these data, benefiting users who are addressing questions related to R-loop regions (RL-Regions), R-loop-binding proteins (RLBPs), R-loop co-localizing factors, and the differences between R-loop-mapping methods. The full data-generating protocol is found here: https://github.com/Bishop-Laboratory/RLBase-data.
Author: Henry Miller [aut, cre, cph] , Alexander Bishop [ths, cph]
Maintainer: Henry Miller <millerh1 at uthscsa.edu>
Citation (from within R,
enter citation("RLHub")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("RLHub")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RLHub")
HTML | R Script | Accessing RLHub Data |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | ChIPSeqData, DNASeqData, ENCODE, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, PackageTypeData, RNASeqData, ReproducibleResearch, SequencingData |
Version | 1.0.0 |
License | MIT + file LICENSE |
Depends | |
Imports | AnnotationHub, ExperimentHub, utils |
LinkingTo | |
Suggests | knitr, DT, rmarkdown, testthat, BiocStyle |
SystemRequirements | |
Enhances | |
URL | https://github.com/Bishop-Laboratory/RLHub https://bishop-laboratory.github.io/RLHub/ |
BugReports | https://github.com/Bishop-Laboratory/RLHub/issues |
Depends On Me | |
Imports Me | RLSeq |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | RLHub_1.0.0.tar.gz |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/RLHub |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RLHub |
Package Short Url | https://bioconductor.org/packages/RLHub/ |
Package Downloads Report | Download Stats |
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