Bioconductor version: Release (3.14)
Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.
Author: Jonathan Griffiths [aut, cre], Aaron Lun [aut]
Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>
Citation (from within R,
enter citation("MouseGastrulationData")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MouseGastrulationData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MouseGastrulationData")
HTML | R Script | Available datasets |
Reference Manual | ||
Text | NEWS |
biocViews | ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData |
Version | 1.8.0 |
License | GPL-3 |
Depends | R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment |
Imports | methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/MarioniLab/MouseGastrulationData |
BugReports | https://github.com/MarioniLab/MouseGastrulationData/issues |
Depends On Me | OSCA.multisample |
Imports Me | |
Suggests Me | miloR |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MouseGastrulationData_1.8.0.tar.gz |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/MouseGastrulationData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MouseGastrulationData |
Package Short Url | https://bioconductor.org/packages/MouseGastrulationData/ |
Package Downloads Report | Download Stats |
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