DeSousa2013

DOI: 10.18129/B9.bioc.DeSousa2013    

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Bioconductor version: Release (3.14)

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DeSousa2013")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeSousa2013")

 

PDF	R Script	Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions
PDF		Reference Manual

Details

biocViews	CancerData, ColonCancerData, ExperimentData, MicroarrayData
Version	1.30.0
License	Artistic-2.0
Depends	R (>= 2.15)
Imports	affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DeSousa2013_1.30.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/DeSousa2013
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DeSousa2013
Package Short Url	https://bioconductor.org/packages/DeSousa2013/
Package Downloads Report	Download Stats