BSgenome.Hsapiens.UCSC.hg38.masked

DOI: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg38.masked    

Full masked genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p13)

Bioconductor version: Release (3.14)

Full genome sequences for Homo sapiens (Human) as provided by UCSC (genome hg38, based on GRCh38.p13) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg38, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg38.masked")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.4.4
License	Artistic-2.0
Depends	R (>= 3.5.0), BSgenome(>= 1.60.0), BSgenome.Hsapiens.UCSC.hg38
Imports	BSgenome, BSgenome.Hsapiens.UCSC.hg38
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Suggests Me	BSgenome, podkat, spiky
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg38.masked_1.4.4.tar.gz
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Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38.masked/
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