struct

DOI: 10.18129/B9.bioc.struct    

Statistics in R Using Class-based Templates

Bioconductor version: Release (3.14)

Defines and includes a set of class-based templates for developing and implementing data processing and analysis workflows, with a strong emphasis on statistics and machine learning. The templates can be used and where needed extended to 'wrap' tools and methods from other packages into a common standardised structure to allow for effective and fast integration. Model objects can be combined into sequences, and sequences nested in iterators using overloaded operators to simplify and improve readability of the code. Ontology lookup has been integrated and implemented to provide standardised definitions for methods, inputs and outputs wrapped using the class-based templates.

Author: Gavin Rhys Lloyd [aut, cre], Ralf Johannes Maria Weber [aut]

Maintainer: Gavin Rhys Lloyd <g.r.lloyd at bham.ac.uk>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("struct")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("struct")

 

HTML	R Script	Introduction to STRUCT - STatistics in R using Class-based Templates
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software, WorkflowStep
Version	1.6.0
In Bioconductor since	BioC 3.11 (R-4.0) (2 years)
License	GPL-3
Depends	R (>= 4.0)
Imports	methods, ontologyIndex, datasets, graphics, stats, utils, knitr, SummarizedExperiment, S4Vectors, rols
LinkingTo
Suggests	testthat, rstudioapi, rmarkdown, covr, BiocStyle, openxlsx, ggplot2, magick
SystemRequirements
Enhances
URL
Depends On Me	structToolbox
Imports Me	metabolomicsWorkbenchR
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	struct_1.6.0.tar.gz
Windows Binary	struct_1.6.0.zip
macOS 10.13 (High Sierra)	struct_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/struct
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/struct
Package Short Url	https://bioconductor.org/packages/struct/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive