Bioconductor version: Release (3.14)
The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (https://www.dgidb.org/).
Author: Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel
Maintainer: Lars Bosshard <bosshard at nexus.ethz.ch>
Citation (from within R,
enter citation("rDGIdb")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("rDGIdb")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rDGIdb")
R Script | Query DGIdb using R | |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | Annotation, FunctionalGenomics, Pharmacogenetics, Pharmacogenomics, ResearchField, Software, WorkflowStep |
Version | 1.20.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (5.5 years) |
License | MIT + file LICENSE |
Depends | |
Imports | jsonlite, httr, methods, graphics |
LinkingTo | |
Suggests | BiocStyle, knitr, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | rDGIdb_1.20.0.tar.gz |
Windows Binary | rDGIdb_1.20.0.zip |
macOS 10.13 (High Sierra) | rDGIdb_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/rDGIdb |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rDGIdb |
Package Short Url | https://bioconductor.org/packages/rDGIdb/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.14 | Source Archive |
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