Bioconductor version: Release (3.14)
A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.
Author: Fabian Schmich
Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>
Citation (from within R,
enter citation("netprioR")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("netprioR")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netprioR")
HTML | R Script | netprioR Vignette |
Reference Manual | ||
Text | NEWS |
biocViews | CellBasedAssays, ImmunoOncology, Network, Preprocessing, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (5.5 years) |
License | GPL-3 |
Depends | methods, graphics, R (>= 3.3) |
Imports | stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC |
LinkingTo | |
Suggests | knitr, BiocStyle, pander |
SystemRequirements | |
Enhances | |
URL | http://bioconductor.org/packages/netprioR |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | netprioR_1.20.0.tar.gz |
Windows Binary | netprioR_1.20.0.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | netprioR_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/netprioR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/netprioR |
Package Short Url | https://bioconductor.org/packages/netprioR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.14 | Source Archive |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: