nethet

DOI: 10.18129/B9.bioc.nethet    

A bioconductor package for high-dimensional exploration of biological network heterogeneity

Bioconductor version: Release (3.14)

Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).

Author: Nicolas Staedler, Frank Dondelinger

Maintainer: Nicolas Staedler <staedler.n at gmail.com>, Frank Dondelinger <fdondelinger.work at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nethet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nethet")

 

PDF	R Script	nethet
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, GraphAndNetwork, Software
Version	1.26.0
In Bioconductor since	BioC 3.1 (R-3.2) (7 years)
License	GPL-2
Depends
Imports	glasso, mvtnorm, GeneNet, huge, CompQuadForm, ggm, mclust, parallel, GSA, limma, multtest, ICSNP, glmnet, network, ggplot2, grDevices, graphics, stats, utils
LinkingTo
Suggests	knitr, xtable, BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nethet_1.26.0.tar.gz
Windows Binary	nethet_1.26.0.zip
macOS 10.13 (High Sierra)	nethet_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/nethet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/nethet
Package Short Url	https://bioconductor.org/packages/nethet/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive