ncdfFlow

DOI: 10.18129/B9.bioc.ncdfFlow    

ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Bioconductor version: Release (3.14)

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

Author: Mike Jiang,Greg Finak,N. Gopalakrishnan

Maintainer: Mike Jiang <mike at ozette.ai>, Jake Wagner <jpwagner at fhcrc.org>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncdfFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncdfFlow")

 

PDF	R Script	Basic Functions for Flow Cytometry Data
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	FlowCytometry, ImmunoOncology, Software
Version	2.40.0
In Bioconductor since	BioC 2.9 (R-2.14) (10.5 years)
License	file LICENSE
Depends	R (>= 2.14.0), flowCore(>= 1.51.7), RcppArmadillo, methods, BH
Imports	Biobase, BiocGenerics, flowCore, zlibbioc
LinkingTo	Rcpp, RcppArmadillo, BH, Rhdf5lib
Suggests	testthat, parallel, flowStats, knitr
SystemRequirements
Enhances
URL
Depends On Me	ggcyto
Imports Me	flowStats, flowWorkspace, openCyto
Suggests Me	COMPASS, cydar
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ncdfFlow_2.40.0.tar.gz
Windows Binary	ncdfFlow_2.40.0.zip
macOS 10.13 (High Sierra)	ncdfFlow_2.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ncdfFlow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ncdfFlow
Package Short Url	https://bioconductor.org/packages/ncdfFlow/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive