maPredictDSC

DOI: 10.18129/B9.bioc.maPredictDSC    

Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge

Bioconductor version: Release (3.14)

This package implements the classification pipeline of the best overall team (Team221) in the IMPROVER Diagnostic Signature Challenge. Additional functionality is added to compare 27 combinations of data preprocessing, feature selection and classifier types.

Author: Adi Laurentiu Tarca <atarca at med.wayne.edu>

Maintainer: Adi Laurentiu Tarca <atarca at med.wayne.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("maPredictDSC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("maPredictDSC")

 

PDF	R Script	maPredictDSC
PDF		Reference Manual

Details

biocViews	Classification, Microarray, Software
Version	1.32.0
In Bioconductor since	BioC 2.13 (R-3.0) (8.5 years)
License	GPL-2
Depends	R (>= 2.15.0), MASS, affy, limma, gcrma, ROC, class, e1071, caret, hgu133plus2.db, ROCR, AnnotationDbi, LungCancerACvsSCCGEO
Imports
LinkingTo
Suggests	parallel
SystemRequirements
Enhances
URL	http://bioinformaticsprb.med.wayne.edu/maPredictDSC
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	maPredictDSC_1.32.0.tar.gz
Windows Binary	maPredictDSC_1.32.0.zip
macOS 10.13 (High Sierra)	maPredictDSC_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/maPredictDSC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/maPredictDSC
Package Short Url	https://bioconductor.org/packages/maPredictDSC/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive