Bioconductor version: Release (3.14)
Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.
Author: Clara Benoit-Pilven [aut], Camille Marchet [aut], Janice Kielbassa [aut], Lilia Brinza [aut], Audric Cologne [aut], Aurélie Siberchicot [aut, cre], Vincent Lacroix [aut], Frank Picard [ctb], Laurent Jacob [ctb], Vincent Miele [ctb]
Maintainer: Aurélie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>
Citation (from within R,
enter citation("kissDE")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("kissDE")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("kissDE")
R Script | kissDE.pdf | |
Reference Manual |
biocViews | AlternativeSplicing, DifferentialSplicing, ExperimentalDesign, GenomicVariation, RNASeq, Software, Transcriptomics |
Version | 1.14.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (4 years) |
License | GPL (>= 2) |
Depends | |
Imports | aod, Biobase, DESeq2, DSS, ggplot2, gplots, graphics, grDevices, matrixStats, stats, utils, foreach, doParallel, parallel |
LinkingTo | |
Suggests | BiocStyle, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | kissDE_1.14.0.tar.gz |
Windows Binary | kissDE_1.14.0.zip |
macOS 10.13 (High Sierra) | kissDE_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/kissDE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/kissDE |
Package Short Url | https://bioconductor.org/packages/kissDE/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.14 | Source Archive |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: