derfinderHelper

DOI: 10.18129/B9.bioc.derfinderHelper    

derfinder helper package

Bioconductor version: Release (3.14)

Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.

Author: Leonardo Collado-Torres [aut, cre] , Andrew E. Jaffe [aut] , Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("derfinderHelper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderHelper")

 

HTML	R Script	Introduction to derfinderHelper
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version	1.28.0
In Bioconductor since	BioC 3.0 (R-3.1) (7.5 years)
License	Artistic-2.0
Depends	R (>= 3.2.2)
Imports	IRanges(>= 1.99.27), Matrix, methods, S4Vectors(>= 0.2.2)
LinkingTo
Suggests	sessioninfo, knitr (>= 1.6), BiocStyle(>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr
SystemRequirements
Enhances
URL	https://github.com/leekgroup/derfinderHelper
BugReports	https://support.bioconductor.org/t/derfinderHelper
Depends On Me
Imports Me	derfinder
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	derfinderHelper_1.28.0.tar.gz
Windows Binary	derfinderHelper_1.28.0.zip
macOS 10.13 (High Sierra)	derfinderHelper_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/derfinderHelper
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/derfinderHelper
Package Short Url	https://bioconductor.org/packages/derfinderHelper/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive