ProtGenerics

DOI: 10.18129/B9.bioc.ProtGenerics    

Generic infrastructure for Bioconductor mass spectrometry packages

Bioconductor version: Release (3.14)

S4 generic functions and classes needed by Bioconductor proteomics packages.

Author: Laurent Gatto <laurent.gatto at uclouvain.be>, Johannes Rainer <johannes.rainer at eurac.edu>

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ProtGenerics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, MassSpectrometry, Proteomics, Software
Version	1.26.0
In Bioconductor since	BioC 3.1 (R-3.2) (7 years)
License	Artistic-2.0
Depends	methods
Imports
LinkingTo
Suggests	testthat
SystemRequirements
Enhances
URL	https://github.com/RforMassSpectrometry/ProtGenerics
Depends On Me	Cardinal, MSnbase, Spectra, tofsims, topdownr
Imports Me	ensembldb, matter, MsBackendMassbank, MsFeatures, MSGFplus, MSnID, mzID, mzR, QFeatures, xcms
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ProtGenerics_1.26.0.tar.gz
Windows Binary	ProtGenerics_1.26.0.zip
macOS 10.13 (High Sierra)	ProtGenerics_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ProtGenerics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ProtGenerics
Package Short Url	https://bioconductor.org/packages/ProtGenerics/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive