Bioconductor version: Release (3.14)
implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package (Kockmann T. et al. (2020)
Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
Citation (from within R,
enter citation("MsBackendRawFileReader")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MsBackendRawFileReader")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendRawFileReader")
HTML | R Script | On Using and Extending the `MsBackendRawFileReader` Backend. |
Reference Manual | ||
Text | NEWS | |
Text | INSTALL |
biocViews | MassSpectrometry, Metabolomics, Proteomics, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.14 (R-4.1) (< 6 months) |
License | GPL-3 |
Depends | R (>= 4.1), methods, Spectra(>= 1.2) |
Imports | MsCoreUtils, S4Vectors, IRanges, rawrr(>= 1.1.14), utils, BiocParallel |
LinkingTo | |
Suggests | BiocStyle(>= 2.5), ExperimentHub, knitr, lattice, mzR, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat |
SystemRequirements | mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows. |
Enhances | |
URL | https://github.com/fgcz/MsBackendRawFileReader |
BugReports | https://github.com/fgcz/MsBackendRawFileReader/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MsBackendRawFileReader_1.0.0.tar.gz |
Windows Binary | MsBackendRawFileReader_1.0.0.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | MsBackendRawFileReader_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MsBackendRawFileReader |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsBackendRawFileReader |
Package Short Url | https://bioconductor.org/packages/MsBackendRawFileReader/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.14 | Source Archive |
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