IdeoViz

DOI: 10.18129/B9.bioc.IdeoViz    

Plots data (continuous/discrete) along chromosomal ideogram

Bioconductor version: Release (3.14)

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

Author: Shraddha Pai <shraddha.pai at utoronto.ca>, Jingliang Ren

Maintainer: Shraddha Pai <shraddha.pai at utoronto.ca>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IdeoViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IdeoViz")

 

PDF	R Script	IdeoViz: a package for plotting simple data along ideograms
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Microarray, Software, Visualization
Version	1.30.0
In Bioconductor since	BioC 3.0 (R-3.1) (7.5 years)
License	GPL-2
Depends	Biobase, IRanges, GenomicRanges, RColorBrewer, rtracklayer, graphics, GenomeInfoDb
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IdeoViz_1.30.0.tar.gz
Windows Binary	IdeoViz_1.30.0.zip
macOS 10.13 (High Sierra)	IdeoViz_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IdeoViz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IdeoViz
Package Short Url	https://bioconductor.org/packages/IdeoViz/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive