Bioconductor version: Release (3.14)
Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.
Author: Matt Paul [aut] , Thomas Carroll [aut, cre] , Doug Barrows [aut], Kathryn Rozen-Gagnon [ctb]
Maintainer: Thomas Carroll <tc.infomatics at gmail.com>
Citation (from within R,
enter citation("Herper")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Herper")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual | ||
Text | NEWS |
biocViews | Infrastructure, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (1.5 years) |
License | GPL-3 |
Depends | R (>= 4.0), reticulate |
Imports | utils, rjson, withr, stats |
LinkingTo | |
Suggests | BiocStyle, testthat, knitr, rmarkdown, seqCNA |
SystemRequirements | |
Enhances | |
URL | https://github.com/RockefellerUniversity/Herper |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | Herper_1.4.0.zip |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/Herper |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Herper |
Package Short Url | https://bioconductor.org/packages/Herper/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: