GeneExpressionSignature

DOI: 10.18129/B9.bioc.GeneExpressionSignature    

Gene Expression Signature based Similarity Metric

Bioconductor version: Release (3.14)

This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.

Author: Yang Cao [aut, cre], Fei Li [ctb], Lu Han [ctb]

Maintainer: Yang Cao <yiluheihei at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneExpressionSignature")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneExpressionSignature")

 

HTML	R Script	GeneExpressionSignature
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Software
Version	1.40.0
In Bioconductor since	BioC 2.9 (R-2.14) (10.5 years)
License	GPL-2
Depends	R (>= 4.0)
Imports	Biobase, stats, methods
LinkingTo
Suggests	apcluster, GEOquery, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/yiluheihei/GeneExpressionSignature
BugReports	https://github.com/yiluheihei/GeneExpressionSignature/issues/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneExpressionSignature_1.40.0.tar.gz
Windows Binary	GeneExpressionSignature_1.40.0.zip
macOS 10.13 (High Sierra)	GeneExpressionSignature_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneExpressionSignature
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneExpressionSignature
Package Short Url	https://bioconductor.org/packages/GeneExpressionSignature/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive