getTreat {variancePartition} | R Documentation |
Test if coefficient is different from a specified value
getTreat(fit, lfc = log2(1.2), coef = 1, number = 10, sort.by = "p") ## S4 method for signature 'MArrayLM' getTreat(fit, lfc = log2(1.2), coef = 1, number = 10, sort.by = "p") ## S4 method for signature 'MArrayLM2' getTreat(fit, lfc = log2(1.2), coef = 1, number = 10, sort.by = "p")
fit |
fit |
lfc |
a minimum log2-fold-change below which changes not considered scientifically meaningful |
coef |
which coefficient to test |
number |
number of genes to return |
sort.by |
column to sort by |
results of getTreat
data(varPartData) form <- ~ Age + Batch + (1|Individual) + (1|Tissue) fit = dream( geneExpr, form, info) fit = eBayes(fit) coef = 'Age' # Evaluate treat()/topTreat() in a way that works seamlessly for dream() getTreat(fit, lfc=log2(1.03), coef, sort.by="none", number=3)