read_transfac {universalmotif} | R Documentation |
Import TRANSFAC formatted motifs. Assumed to be DNA motifs, type PCM.
See system.file("extdata", "transfac.txt", pacakge="universalmotif")
for an example motif.
read_transfac(file, skip = 0)
file |
|
skip |
|
list
universalmotif objects.
Benjamin Jean-Marie Tremblay, benjamin.tremblay@uwaterloo.ca
Wingender E, Dietze P, Karas H, Knuppel R (1996). “TRANSFAC: A Database on Transcription Factors and Their DNA Binding Sites.” Nucleic Acids Research, 24, 238-241.
Other read_motifs:
read_cisbp()
,
read_homer()
,
read_jaspar()
,
read_matrix()
,
read_meme()
,
read_motifs()
,
read_uniprobe()
transfac <- read_transfac(system.file("extdata", "transfac.txt", package = "universalmotif"))