fluidigmSC_analyzeGeneDetection {uSORT}R Documentation

A gene detection function

Description

A gene detection function computes the fraction of genes detected in each cell, reproduced from FluidigmSC package.

Usage

fluidigmSC_analyzeGeneDetection(expression_data, threshold = 1)

Arguments

expression_data

A data frame containing raw expression values, with rownames of genes and colnames of cells.

threshold

A limit of detection in the unit of TPM/CPM/RPMK.

Value

A data frame containing a column of number of genes detected, and a column of the corresponding percentage of gene detection, rownames of cells.


[Package uSORT version 1.20.0 Index]