fluidigmSC_removeGenesByLinearExpForAllType_log2 {uSORT}R Documentation

A gene trimming function

Description

A gene trimming function removes genes whose average expression value is below the log2(threshold); reproduced from FluidigmSC package.

Usage

fluidigmSC_removeGenesByLinearExpForAllType_log2(log2ex_data, threshold)

Arguments

log2ex_data

A data frame containing log2 tranformed expression values, with rownames of genes and colnames of cells.

threshold

A limit of detection in the unit of TPM/CPM/RPMK.

Value

A vector of character containing gene names of those passed the filtering.


[Package uSORT version 1.20.0 Index]