print.traseR {traseR} | R Documentation |
Print the outcome of taSNP enrichment analyses. Print the overall taSNP enrichment, trait-specific taSNP enrichment,trait-class-specific taSNP enrichment.
## S3 method for class 'traseR' print(x,isTopK1=FALSE,topK1=10,isTopK2=FALSE,topK2=10,trait.threshold=10,traitclass.threshold=10,...)
x |
Object returned from |
isTopK1 |
If isTopK1 is TRUE, topK1 traits are printed; otherwise, traits with p-value below Bonferroni correction threshold are printed. Default is FALSE. |
topK1 |
Top K1 traits are printed. Default is 10. |
isTopK2 |
If isTopK2 is TRUE, topK2 trait class are printed; otherwise, trait class with p-value below Bonferroni correction threshold are printed. Default is FALSE. |
topK2 |
Top K2 trait class are printed. Default is 10. |
trait.threshold |
Traits above this threshold are reported. Default is 10. |
traitclass.threshold |
Trait class above this threshold are reported. Default is 10. |
... |
Other parameters to |
Print a data frame of traits ranked by p-value
Li Chen <li.chen@emory.edu>, Zhaohui S.Qin<zhaohui.qin@emory.edu>
data(taSNP) data(Tcell) x=traseR(snpdb=taSNP,region=Tcell) print(x)