ec2reaction {transomics2cytoscape}R Documentation

Convert KEGG enzyme IDs to KEGG reaction IDs.

Description

Convert KEGG enzyme IDs to KEGG reaction IDs

Usage

ec2reaction(tsvFilePath, columnIndex, outputFilename)

Arguments

tsvFilePath

Path of a TSV file with the 9 columns (layer index of a source node, name or KEGG object ID that the source node should have, layer index of a target node, name or KEGG object ID that the target node should have, interaction type).

columnIndex

The column number

outputFilename

The output filename

Value

None

Author(s)

Kozo Nishida

Examples

## Not run: 
ec = system.file("extdata", "allosteric_ecnumber.tsv",
    package = "transomics2cytoscape")
ec2reaction(ec, 8, "allosteric.tsv")

## End(Not run)

[Package transomics2cytoscape version 1.4.0 Index]