generate_permuted_enrichments {transite} | R Documentation |
Calculates k-mer enrichment values for randomly sampled (without replacement) foreground sets.
generate_permuted_enrichments( n_transcripts_foreground, background_set, k, n_permutations = 1000, n_cores = 4 )
n_transcripts_foreground |
number of transcripts in the original foreground set |
background_set |
character vector of DNA or RNA sequences that constitute the background set |
k |
length of k-mer, either |
n_permutations |
number of permutations to perform |
n_cores |
number of computing cores to use |
The result of calculate_kmer_enrichment
for the
random foreground sets.
Other k-mer functions:
calculate_kmer_enrichment()
,
check_kmers()
,
compute_kmer_enrichment()
,
count_homopolymer_corrected_kmers()
,
draw_volcano_plot()
,
estimate_significance_core()
,
estimate_significance()
,
generate_kmers()
,
run_kmer_spma()
,
run_kmer_tsma()