associated_peaks {target}R Documentation

Predict associated peaks

Description

This function selects overlapping peaks and regions, calculates the distance between them and score each peak.

Usage

associated_peaks(peaks, regions, regions_col, base = 1e+05)

Arguments

peaks

A GRanges object

regions

A GRanges object

regions_col

A character string

base

An integer to calculate distances relative to.

Value

A GRanges object. A similar object to peaks with three added metadata columns.

Examples

# load peaks and transcripts data
data("real_peaks")
data("real_transcripts")

# associated peaks
ap <- associated_peaks(real_peaks, real_transcripts, 'name2')


[Package target version 1.8.0 Index]