get_overlap_mask {synapsis}R Documentation

get_overlap_mask

Description

creates mask for coincident foci

Usage

get_overlap_mask(
  strands,
  foci_label,
  watershed_stop,
  img_orig_foci,
  watershed_radius,
  watershed_tol
)

Arguments

strands

black white mask of strand channel

foci_label

black and white mask of foci channel

watershed_stop

Stop default watershed method with "on"

img_orig_foci

cropped foci channel

watershed_radius

Radius (ext variable) in watershed method used in foci channel. Defaults to 1 (small)

watershed_tol

Intensity tolerance for watershed method. Defaults to 0.05.

Value

mask with coincident foci on strands


[Package synapsis version 1.0.0 Index]