keep_cells {synapsis} | R Documentation |
Deletes objects in mask which are too small, large, oblong i.e. unlikely to be a cell
keep_cells( candidate, max_cell_area, min_cell_area, cell_aspect_ratio, crowded_cells, annotation )
candidate |
Mask of individual cell candidates |
max_cell_area, |
Maximum pixel area of a cell candidate |
min_cell_area, |
Minimum pixel area of a cell candidate |
cell_aspect_ratio |
Maximum aspect ratio of blob to be defined as a cell |
crowded_cells |
TRUE or FALSE, defaults to FALSE. Set to TRUE if you |
annotation, |
Choice to output pipeline choices (recommended to knit) have many cells in a frame that almost touch |
Mask of cell candidates which meet size criteria