get_overlap_mask {synapsis} | R Documentation |
creates mask for coincident foci
get_overlap_mask( strands, foci_label, watershed_stop, img_orig_foci, watershed_radius, watershed_tol )
strands |
black white mask of strand channel |
foci_label |
black and white mask of foci channel |
watershed_stop |
Stop default watershed method with "on" |
img_orig_foci |
cropped foci channel |
watershed_radius |
Radius (ext variable) in watershed method used in foci channel. Defaults to 1 (small) |
watershed_tol |
Intensity tolerance for watershed method. Defaults to 0.05. |
mask with coincident foci on strands