.scoreByTranscripts {svaRetro}R Documentation

Ranking matching transcripts

Description

Ranking matching transcripts

Usage

.scoreByTranscripts(genes, transcripts.col)

Arguments

genes

TxDb object of genes. hg19 and hg38 are supported in the current version.

transcripts.col

A vector of transcript names.

Details

This is an internal function which returns overlapping transcript names with ranking scores. The ranking score is the proportion of exon-exon fusions (intronic deletion events) detected for a given transcript.

Value

A dataframe with two columns, tx_name and score.


[Package svaRetro version 1.0.0 Index]