svaNUMT {svaNUMT}R Documentation

svaNUMT: a package for NUMT detection

Description

svaNUMT contains functions for detecting NUMT events from structural variant calls. svaNUMT contains functions for detecting NUMT events from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies NUMTs by nuclear-mitochondrial breakend junctions. The main function reports candidate NUMTs if there is a pair of valid insertion sites found on the nuclear genome within a certain distance threshold. The candidate NUMTs are reported by events.

Details

For more details on the features of StructuralVariantAnnotation, read the vignette: 'browseVignettes(package = "svaNUMT")'


[Package svaNUMT version 1.0.0 Index]