.mtLen {svaNUMT}R Documentation

Calculating MT sequence length.

Description

Calculating MT sequence length.

Usage

.mtLen(bnd.start, bnd.end, chrM.len)

Arguments

bnd.start

starting breakend of the MT sequence.

bnd.end

ending breakend of the MT sequence.

chrM.len

length of the reference MT genome.

Details

This function calculate the length of MT sequence length with BND notations.

Value

The length of the MT sequence. When the candidate MT BNDs can't be linked as one sequence, the returned value is NA.


[Package svaNUMT version 1.0.0 Index]