phage {spiky}R Documentation

lambda and phiX phage sequences, sometimes used as spike-ins

Description

A DataFrame with sequence, methylated, CpGs, GCfrac, and OECpG for phages

Usage

data(phage)

Format

A DataFrame object with

sequence

genome sequence, as a DNAStringSet

methylated

whether CpGs are methylated, as an integer

CpGs

the number of CpGs in the phage genome, as an integer

GCfrac

the GC fraction of the phage genome, as a numeric

OECpG

the observed / expected CpG fraction, as a numeric

Source

www.ncbi.nlm.nih.gov/genbank/


[Package spiky version 1.0.0 Index]