methylation_specificity {spiky} | R Documentation |
In a cfMeDIP experiment, the yield of methylated fragments should be >95% (ideally 98-99%) due to the nature of the assay.
methylation_specificity(ssb_res, spike)
ssb_res |
output object from scan_spiked_bam |
spike |
spike contig database, if needed (e.g. data(spike)) |
list with median and mean coverage across spike contigs
data(ssb_res) data(spike, package="spiky") methylation_specificity(ssb_res,spike=spike)