lis.deg.up.down {spatialHeatmap}R Documentation

A nested list of differentialy-expressed genes (DEGs) detected by different methods

Description

A nested list of up- and down-DEGs detected by different methods such as edgeR, limma, DEseq2.

Usage

data(lis.deg.up.down)

Format

A nested list.

Source

ExpressionAtlas E-MTAB-6769

References

Cardoso-Moreira, Margarida, Jean Halbert, Delphine Valloton, Britta Velten, Chunyan Chen, Yi Shao, Angélica Liechti, et al. 2019. “Gene Expression Across Mammalian Organ Development.” Nature 571 (7766): 505–9

Examples

data(lis.deg.up.down)
lis.deg.up.down$up.lis$edgeR.up[1:5]

[Package spatialHeatmap version 2.0.0 Index]