slingPseudotime {slingshot} | R Documentation |
Extract the matrix of pseudotime values or cells' weights along each lineage.
slingPseudotime(x, ...) slingCurveWeights(x, ...) ## S4 method for signature 'PseudotimeOrdering' slingPseudotime(x, na = TRUE) ## S4 method for signature 'SingleCellExperiment' slingPseudotime(x, na = TRUE) ## S4 method for signature 'SlingshotDataSet' slingPseudotime(x, na = TRUE) ## S4 method for signature 'PseudotimeOrdering' slingCurveWeights(x, as.probs = FALSE) ## S4 method for signature 'SingleCellExperiment' slingCurveWeights(x) ## S4 method for signature 'SlingshotDataSet' slingCurveWeights(x, as.probs = FALSE)
x |
an object containing |
... |
additional parameters to be passed to object-specific methods. |
na |
logical. If |
as.probs |
logical. If |
slingPseudotime
: an n
by L
matrix representing
each cell's pseudotime along each lineage.
slingCurveWeights
: an n
by L
matrix of cell
weights along each lineage.
data("slingshotExample") rd <- slingshotExample$rd cl <- slingshotExample$cl pto <- slingshot(rd, cl, start.clus = '1') slingPseudotime(pto) slingCurveWeights(pto)