seuratICA {singleCellTK} | R Documentation |
seuratICA Computes ICA on the input sce object and stores the calculated independent components within the sce object
seuratICA( inSCE, useAssay, reducedDimName = "seuratICA", features = NULL, nics = 20 )
inSCE |
(sce) object on which to compute ICA |
useAssay |
Assay containing scaled counts to use in ICA. |
reducedDimName |
Name of new reducedDims object containing Seurat ICA
Default |
features |
Specify the feature names or rownames which should be used
for computation of ICA. Default is |
nics |
Number of independent components to compute. Default |
Updated SingleCellExperiment
object which now contains the
computed independent components
data(scExample, package = "singleCellTK") ## Not run: sce <- seuratNormalizeData(sce, useAssay = "counts") sce <- seuratFindHVG(sce, useAssay = "counts") sce <- seuratScaleData(sce, useAssay = "counts") sce <- seuratICA(sce, useAssay = "counts") ## End(Not run)