generateMeta {singleCellTK} | R Documentation |
Generate HTAN manifest file for droplet and cell count data
generateMeta( dropletSCE = NULL, cellSCE = NULL, samplename, dir, HTAN = TRUE, dataType = c("Droplet", "Cell", "Both") )
dropletSCE |
A SingleCellExperiment object containing droplet count matrix data |
cellSCE |
A SingleCellExperiment object containing cell count matrix data |
samplename |
The sample name of the SingleCellExperiment objects |
dir |
The output directory of the SCTK QC pipeline. |
HTAN |
Whether generates manifest file including HTAN specific ID (HTAN Biospecimen ID, HTAN parent file ID and HTAN patient ID). Default is TRUE. |
dataType |
Type of the input data. It can be one of "Droplet", "Cell" or "Both". |
A SingleCellExperiment object which combines all objects in sceList. The colData is merged.