seuratScaleData {singleCellTK} | R Documentation |
seuratScaleData Scales the input sce object according to the input parameters
seuratScaleData( inSCE, useAssay = "seuratNormData", scaledAssayName = "seuratScaledData", model = "linear", scale = TRUE, center = TRUE, scaleMax = 10, verbose = TRUE )
inSCE |
(sce) object to scale |
useAssay |
Assay containing normalized counts to scale. |
scaledAssayName |
Name of new assay containing scaled data. Default
|
model |
selected model to use for scaling data. Default |
scale |
boolean if data should be scaled or not. Default |
center |
boolean if data should be centered or not. Default |
scaleMax |
maximum numeric value to return for scaled data. Default
|
verbose |
Logical value indicating if informative messages should
be displayed. Default is |
Scaled SingleCellExperiment
object
data(scExample, package = "singleCellTK") ## Not run: sce <- seuratNormalizeData(sce, useAssay = "counts") sce <- seuratFindHVG(sce, useAssay = "counts") sce <- seuratScaleData(sce, useAssay = "counts") ## End(Not run)