dataAnnotationColor {singleCellTK}R Documentation

Generate distinct colors for all categorical col/rowData entries. Character columns will be considered as well as all-integer columns. Any column with all-distinct values will be excluded.

Description

Generate distinct colors for all categorical col/rowData entries. Character columns will be considered as well as all-integer columns. Any column with all-distinct values will be excluded.

Usage

dataAnnotationColor(inSCE, axis = NULL, colorGen = distinctColors)

Arguments

inSCE

SingleCellExperiment inherited object.

axis

Choose from "col" or "row".

colorGen

A function that generates color code vector by giving an integer for the number of colors. Alternatively, rainbow. Default distinctColors.

Value

A list object containing distinct colors mapped to all possible categorical entries in rowData(inSCE) or colData(inSCE).

Author(s)

Yichen Wang


[Package singleCellTK version 2.4.0 Index]