detectionPnegEcdf {sesame} | R Documentation |
The function takes a SigDF
as input, computes detection p-value
using negative control probes' empirical distribution and returns a new
SigDF
with an updated mask slot.
detectionPnegEcdf(sdf, return.pval = FALSE, pval.threshold = 0.05)
sdf |
a |
return.pval |
whether to return p-values, instead of a
masked |
pval.threshold |
minimum p-value to mask |
a SigDF
, or a p-value vector if return.pval is TRUE
sdf <- sesameDataGet("EPIC.1.SigDF") sum(sdf$mask) sum(detectionPnegEcdf(sdf)$mask)