qualityMask {sesame} | R Documentation |
Currently quality masking only supports three platforms
qualityMask( sdf, mask.use.manifest = TRUE, manifest = NULL, mask.use.tcga = FALSE )
sdf |
a |
mask.use.manifest |
use manifest to mask probes |
manifest |
the manifest to use, for custom arrays |
mask.use.tcga |
whether to use TCGA masking, only applies to HM450 |
a filtered SigDF
sesameDataCache("EPIC") # if not done yet sdf <- sesameDataGet('EPIC.1.SigDF') sum(sdf$mask) sum(qualityMask(sdf)$mask)