sesamize {sesame} | R Documentation |
HDF5Array
package required.
sesamize( rgSet, naFrac = 1, BPPARAM = SerialParam(), HDF5 = NULL, HDF5SEdestination = paste0(tempdir(check = TRUE), "/sesamize_HDF5_scratch"), replace = FALSE )
rgSet |
an RGChannelSet, perhaps with colData of various flavors |
naFrac |
maximum NA fraction for a probe before it gets dropped (1) |
BPPARAM |
get parallel with MulticoreParam(n) |
HDF5 |
is the rgSet HDF5-backed? if so, avoid eating RAM (perhaps) |
HDF5SEdestination |
character(1) path to where the HDF5-backed GenomicRatioSet will be stored |
replace |
logical(1) passed to saveHDF5SummarizedExperiment |
a sesamized GenomicRatioSet
We employ BPREDO for a second chance if bplapply hits an error.
if(FALSE) { library(FlowSorted.CordBloodNorway.450k) sesamize(FlowSorted.CordBloodNorway.450k[,1:2], BPPARAM=MulticoreParam(2)) }