easyLoad_IDRmerged {seqsetvis} | R Documentation |
easyLoad_IDRmerged loads "overlapped-peaks.txt" from IDR.
easyLoad_IDRmerged( file_paths, file_names = NULL, n_cores = getOption("mc.cores", 1), max_idr = 0.05 )
file_paths |
character vector of paths to narrowPeak files. If named, those names will be used in output unless overriden by providing file_names. |
file_names |
character vector of names for output list. If not NULL will override any existing names for file_paths. Default is NULL. |
n_cores |
number of cores to use, uses mc.cores option if set or 1. |
max_idr |
maximum IDR value allowed |
named list of GRanges
idr_file = system.file("extdata/test_idr.overlapped-peaks.txt", package = "seqsetvis", mustWork = TRUE) easyLoad_IDRmerged(idr_file) easyLoad_IDRmerged(idr_file, max_idr = .01)