plot {seqcombo} | R Documentation |
plot method for SeqDiff object
## S4 method for signature 'SeqDiff,ANY' plot( x, width = 50, title = "auto", xlab = "Nucleotide Position", by = "bar", fill = "firebrick", colors = c(A = "#E495A5", C = "#ABB065", G = "#39BEB1", T = "#ACA4E2"), xlim = NULL )
x |
SeqDiff object |
width |
bin width |
title |
plot title |
xlab |
xlab |
by |
one of 'bar' and 'area' |
fill |
fill color of upper part of the plot |
colors |
color of lower part of the plot |
xlim |
limits of x-axis |
plot
guangchuang yu
fas <- list.files(system.file("examples","GVariation", package="seqcombo"), pattern="fas", full.names=TRUE) x1 <- seqdiff(fas[1], reference=1) plot(x1)