kMerIndex {seqTools} | R Documentation |
For each k, there exist $4^k$ DNA k-mers. Many functions inside this package
return values where DNA k-mers appear as array indices. kMerIndex
can be used for extraction of count values for special k-mers by provision
of index values.
kMerIndex(kMers, k=nchar(kMers)[1], base=1)
kMers |
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k |
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base |
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Maximal allowed value for k is 12.
integer
.
Wolfgang Kaisers
kMerIndex(c("AACC", "ATAA")) kMerIndex(c("AA","AC"), base=1) kMerIndex(c("AA","AC"), base=0)