read_overlap_file {segmenter}R Documentation

Read segments files

Description

The segments files are the output of running learn_model and named <cell>_3_overlap.txt

Usage

read_overlap_file(file, states, regions)

Arguments

file

A string. The path to the file.

states

A character vector. The names of the states.

regions

A character vector. The names of the regions.

Value

A matrix

Examples

# locate the file
fl <- file.path(tempdir(), 'GM12878_3_overlap.txt')

# read the file
read_overlap_file(fl)


[Package segmenter version 1.0.0 Index]