annotate_segments {segmenter}R Documentation

Annotate segments

Description

Annotate the GRanges objects of the segments using annotatePeak (see for details)

Usage

annotate_segments(segments, ...)

Arguments

segments

A GRanges object. Usually the output of calling segment on the the output object of lean_model.

...

Other arguments passed to annotatePeak

Value

A GRanges object which is identical to the input in addition to the annotations as metadata columns.

Examples

library(TxDb.Hsapiens.UCSC.hg18.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg18.knownGene
segs <- segment(test_obj)
segs_annotated <- annotate_segments(segs, TxDb = txdb, verbose = FALSE)


[Package segmenter version 1.0.0 Index]