binarize_bed {segmenter} | R Documentation |
Transform the aligned reads into a binary format.
binarize_bed( inputdir, cellmarkfiletable, chromsizefile, binsize = 200, outputdir )
inputdir |
A string. The dirctory of the bam files. |
cellmarkfiletable |
A string. The path to the input files table. Only |
chromsizefile |
A string. The path to the chromosomes sizes file. |
binsize |
An integer. The number in bp used to generate binarized files. |
outputdir |
A string. The path to a directory where output will be written. |
NULL. Write files to the outputdir
Binarize binarize_bam