read_bam_file {segmenter} | R Documentation |
bam
filesCount the reads in each range of the GRanges
object
read_bam_file(file, features, ...)
file |
A string. The path to the file. |
features |
A |
... |
Other arguments passed to |
A matrix
# locate the bam file bam_file <- system.file("extdata", "randomBam.bam", package = "bamsignals") # load a granges object rand_anno <- system.file("extdata", "randomAnnot.Rdata", package = "bamsignals") features <- GenomicRanges::promoters(get(load(rand_anno))) # count reads in ranges read_bam_file(bam_file, features)