count_reads_ranges {segmenter} | R Documentation |
GRanges
objects from bam filesCount reads in GRanges
objects from bam files
count_reads_ranges(ranges, cellmarkfiletable, inputbamdir)
ranges |
A |
cellmarkfiletable |
A string. The path to the input files table. |
inputbamdir |
A |
A SummarizedExperiment
object with ranges
as its
rowRanges
and the counts as the assay
.