getMatchTypes {scanMiR} | R Documentation |
Given a seed and a set of sequences matching it, returns the type of match.
getMatchTypes(x, seed, checkWobble = TRUE)
x |
A character vector of short sequences. |
seed |
A 7 or 8 nucleotides string indicating the seed (5' to 3' sequence of the target RNA). If of length 7, an "A" will be appended. |
checkWobble |
Whether to flag wobbled sites |
A factor of match types.
x <- c("AACACTCCAG","GACACTCCGC","GTACTCCAT","ACGTACGTAC") getMatchTypes(x, seed="ACACTCCA")