scTHI_runTsne {scTHI} | R Documentation |
Runs t-SNE dimensionality reduction on selected features based on Rtsne package.
scTHI_runTsne(scTHIresult)
scTHIresult |
scTHI object. |
The same object as scTHI_score with a fifth item tsneData (data.frame)
library(scTHI.data) data(scExample) result <- scTHI_score(scExample, cellCusterA = colnames(scExample)[1:30], cellCusterB = colnames(scExample)[31:100], cellCusterAName = "ClusterA", cellCusterBName = "ClusterB", filterCutoff = 0, pvalueCutoff = 1, nPermu = 100, ncore = 8) result <- scTHI_runTsne(result)