calIndex {scRepertoire}R Documentation

Calculate cluster level indices

Description

Calculate cluster level indices

Usage

Startrac.calIndex(object, cores, n.perm, normEntropy)

## S4 method for signature 'Startrac'
calIndex(object, cores = NULL, n.perm = NULL, normEntropy = FALSE)

Arguments

object

A Startrac object

cores

number of core to be used. Passed to doParallel registerDoParallel. default: NULL.

n.perm

integer number of permutation will be performed. If NULL, no permutation. (default: NULL)

normEntropy

logical; whether normalize migration and transition index. default: FALSE.

Value

an object of class Startrac


[Package scRepertoire version 1.4.0 Index]