Startrac.run {scRepertoire} | R Documentation |
warpper function for Startrac analysis
Startrac.run( cell.data, proj = "CRC", cores = NULL, n.perm = NULL, verbose = FALSE )
cell.data |
data.frame. Each line for a cell, and these columns as required: 'Cell_Name', 'clone.id', 'patient', 'majorCluster', 'loc' |
proj |
character. String used to annotate the project. |
cores |
integer. number of core to be used. default: NULL. |
n.perm |
integer. number of permutation will be performed. If NULL, no permutation. (default: NULL) |
verbose |
logical. wheter return intermediate result (some Startrac objects) |
run the Startrac pipeline
an list contains data.frame elements "cluster.data","pIndex.migr" and "pIndex.tran"