cell_barcode_matching {scPipe}R Documentation

cell barcode demultiplex statistics for a small sample scRNA-seq dataset to demonstrate capabilities of scPipe

Description

This data.frame contains cell barcode demultiplex statistics with several rows:

Usage

sc_sample_qc

Format

a data.frame instance, one row per cell.

Value

NULL, but makes a data frame with cell barcode demultiplex statistics

Author(s)

Luyi Tian

Source

Christin Biben (WEHI). She FACS sorted cells from several immune cell types including B cells, granulocyte and some early progenitors.

Examples

data("sc_sample_data")
data("sc_sample_qc")
sce = SingleCellExperiment(assays = list(counts =as.matrix(sc_sample_data)))
organism(sce) = "mmusculus_gene_ensembl"
gene_id_type(sce) = "ensembl_gene_id"
QC_metrics(sce) = sc_sample_qc
demultiplex_info(sce) = cell_barcode_matching
UMI_dup_info(sce) = UMI_duplication

demultiplex_info(sce)


[Package scPipe version 1.16.1 Index]