getCellPairs {scDblFinder} | R Documentation |
Given a vector of cluster labels, returns pairs of cross-cluster cells
getCellPairs( clusters, n = 1000, ls = NULL, q = c(0.1, 0.9), selMode = "proportional", soft.min = 5 )
clusters |
A vector of cluster labels for each cell, or a list containing metacells and graph |
n |
The number of cell pairs to obtain |
ls |
Optional library sizes |
q |
Library size quantiles between which to include cells (ignored if 'ls' is NULL) |
selMode |
How to decide the number of pairs of each kind to produce. Either 'proportional' (default, proportional to the abundance of the underlying clusters), 'uniform' or 'sqrt'. |
soft.min |
Minimum number of pairs of a given type. |
A data.frame with the columns
# create random labels x <- sample(head(LETTERS), 100, replace=TRUE) getCellPairs(x, n=6)