OptimBFA {scBFA} | R Documentation |
Optimize parameters of BFA's likelihood function
OptimBFA(modelEnv, maxit, method)
modelEnv |
Environment variable contains parameter space, and global variables such as N,G,C,detection matrix B, etc |
maxit |
Maximum number of iteration with respect to objective function, default is 300 iterations |
method |
Optimization method, default is the conjugate gradient approach L-BFGS-B is recommended for smaller dataset less than 10k cells |
The entire model environment