marker_genes {scAnnotatR} | R Documentation |
Returns the set of marker genes for the given classifier.
marker_genes(classifier)
classifier |
scAnnotatR object |
Applied marker genes of object
data("tirosh_mel80_example") selected_marker_genes_B = c("CD19", "MS4A1", "CD79A") set.seed(123) classifier_b <- train_classifier(train_obj = tirosh_mel80_example, assay = 'RNA', slot = 'counts', marker_genes = selected_marker_genes_B, cell_type = "B cells", tag_slot = 'active.ident') marker_genes(classifier_b)