cell_type {scAnnotatR} | R Documentation |
Returns the cell type for the given classifier.
cell_type(classifier) ## S4 replacement method for signature 'scAnnotatR' cell_type(classifier) <- value
classifier |
scAnnotatR object. The object is returned from the train_classifier function. |
value |
the new cell type |
cell type of object
scAnnotatR object with the new cell type
data("tirosh_mel80_example") selected_marker_genes_B = c("CD19", "MS4A1", "CD79A") set.seed(123) classifier_b <- train_classifier(train_obj = tirosh_mel80_example, assay = 'RNA', slot = 'counts', marker_genes = selected_marker_genes_B, cell_type = "B cells", tag_slot = 'active.ident') cell_type(classifier_b) data("tirosh_mel80_example") selected_marker_genes_B = c("CD19", "MS4A1", "CD79A") set.seed(123) classifier_b <- train_classifier(train_obj = tirosh_mel80_example, assay = 'RNA', slot = 'counts', marker_genes = selected_marker_genes_B, cell_type = "B cells", tag_slot = 'active.ident') cell_type(classifier_b) <- "B cell"