define_kernel_matrix {scAlign}R Documentation

define kernel matrix

Description

Adds the defined kernel to the operation graph for high dimensional pairwise data similarity

Usage

define_kernel_matrix(
  method,
  data = NULL,
  labels = NULL,
  data_shape,
  perplexity = NULL,
  diag = "zero"
)

Arguments

method

Kernel to compute pairwise cell similarity

data

cell x feature data matrix

labels

cell x 1 annotation (label) vector

data_shape

number of features for data

perplexity

neighborhood parameter for gaussian kernel

diag

indicator for self similarity

Value

Tensorflow op


[Package scAlign version 1.8.0 Index]