qualityHeatmap {savR} | R Documentation |
Plots a heatmap of quality vs cycle for a given lane for 1 or more sequence reads. Read qualities include sequence + index.
qualityHeatmap(project, lane, read, collapse) ## S4 method for signature 'savProject,integer,integer,logical' qualityHeatmap(project, lane, read, collapse = T) ## S4 method for signature 'savProject,numeric,numeric,missing' qualityHeatmap(project, lane, read)
project |
SAV project |
lane |
integer lane specification |
read |
integer vector of sequence reads to include (not including index reads) |
collapse |
whether or not to collapse index reads into the preceeding read (# reads = directions), default TRUE |