SangerAlignment-class-updateQualityParam {sangeranalyseR} | R Documentation |
A SangerAlignment method which updates QualityReport parameter for each the SangerRead instance inside SangerAlignment.
## S4 method for signature 'SangerAlignment' updateQualityParam( object, TrimmingMethod = "M1", M1TrimmingCutoff = 1e-04, M2CutoffQualityScore = NULL, M2SlidingWindowSize = NULL, processorsNum = NULL )
object |
A SangerAlignment S4 instance. |
TrimmingMethod |
The read trimming method for this SangerRead. The value must be |
M1TrimmingCutoff |
The trimming cutoff for the Method 1. If |
M2CutoffQualityScore |
The trimming cutoff quality score for the Method 2. If |
M2SlidingWindowSize |
The trimming sliding window size for the Method 2. If |
processorsNum |
The number of processors to use, or NULL (the default) for all available processors. |
A SangerAlignment instance.
data("sangerAlignmentData") ## Not run: updateQualityParam(sangerAlignmentData, TrimmingMethod = "M2", M1TrimmingCutoff = NULL, M2CutoffQualityScore = 40, M2SlidingWindowSize = 15) ## End(Not run)