writeFastaSA {sangeranalyseR} | R Documentation |
Method writeFastaSA
Description
Method writeFastaSA
Usage
writeFastaSA(
object,
outputDir = NULL,
compress = FALSE,
compression_level = NA,
selection = "all"
)
Arguments
object |
A SangerAlignment S4 instance.
|
outputDir |
The output directory of generated FASTA files.
|
compress |
Like for the save function in base R, must be TRUE or FALSE (the default), or a single string specifying whether writing to the file is to use compression. The only type of compression supported at the moment is "gzip". This parameter will be passed to writeXStringSet function in Biostrings package.
|
compression_level |
This parameter will be passed to writeXStringSet function in Biostrings package.
|
selection |
This value can be all , contigs_alignment , contigs_unalignment or all_reads . It generates reads and contigs FASTA files.
|
Value
The output directory of FASTA files.
Examples
data(sangerAlignmentData)
writeFastaSA(sangerAlignmentData)
[Package
sangeranalyseR version 1.4.0
Index]