ChromatogramParam-class {sangeranalyseR} | R Documentation |
An S4 class storing chromatogram related inputs in a SangerRead S4 object.
baseNumPerRow
It defines maximum base pairs in each row. The default value is 100
.
heightPerRow
It defines the height of each row in chromatogram. The default value is 200
.
signalRatioCutoff
The ratio of the height of a secondary peak to a primary peak. Secondary peaks higher than this ratio are annotated. Those below the ratio are excluded. The default value is 0.33
.
showTrimmed
The logical value storing whether to show trimmed base pairs in chromatogram. The default value is TRUE
.
Kuan-Hao Chao
Chromatogram <- new("ChromatogramParam", baseNumPerRow = 100, heightPerRow = 200, signalRatioCutoff = 0.33, showTrimmed = TRUE)